Alternative access to the data

Oct 13, 2025 by wbrum.org 79 views

Introduction

As a PhD student in Mechanical Engineering with a focus on the intersection of fluid dynamics and epidemiology, I am excited to explore the use of individual-based models for epidemiological simulations. The JUNE framework, an open-source tool, has caught my attention, and I am eager to utilize it for research purposes. However, I have encountered an issue while attempting to download the required data using the get_june_data.sh script. In this request, I would like to inquire about alternative ways to access the data or if the JUNE team would be willing to share it directly.

Background

The JUNE framework is a powerful tool for epidemiological simulations, and its open-source nature makes it an attractive option for researchers. The framework relies on a dataset that is currently not accessible to me due to a 403 Forbidden error when trying to access the URL https://virgodb.dur.ac.uk/downloads/dc-quer1/data_private.zip. This error message suggests that the URL is not publicly accessible, and I am seeking alternative solutions to access the data.

Error Message

The exact error message I receive is as follows:

--2025-03-13 12:35:02--  http://virgodb.dur.ac.uk/downloads/dc-quer1/data_private.zip
Resolving virgodb.dur.ac.uk (virgodb.dur.ac.uk)... 129.234.196.27
Connecting to virgodb.dur.ac.uk (virgodb.dur.ac.uk)|129.234.196.27|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://virgodb.dur.ac.uk/downloads/dc-quer1/data_private.zip [following]
--2025-03-13 12:35:02--  https://virgodb.dur.ac.uk/downloads/dc-quer1/data_private.zip
Connecting to virgodb.dur.ac.uk (virgodb.dur.ac.uk)|129.234.196.27|:443... connected.
HTTP request sent, awaiting response... 403 Forbidden
2025-03-13 12:35:03 ERROR 403: Forbidden.

Request for Assistance

I would like to request the following:

Alternative access to the data: Is there an alternative way to access the data that I can use instead of the get_june_data.sh script?
Direct sharing of the data: Would the JUNE team be willing to share the data directly with me, considering my research purposes?
Guidance on running simulations: In the absence of this dataset, I would appreciate any guidance on how to proceed with running simulations in the JUNE framework.

Conclusion

I believe that the JUNE framework has the potential to greatly impact my research, and I am eager to explore its capabilities. However, the current issue with accessing the required data is hindering my progress. I hope that the JUNE team will be able to assist me in accessing the data or provide guidance on how to proceed with running simulations.

About the Author

I am Akshay Anand, a PhD student in Mechanical Engineering at Florida State University. My research focuses on the intersection of fluid dynamics and epidemiology, and I am excited to explore the use of individual-based models for epidemiological simulations.

Contact Information

Q: What is the JUNE framework, and why is it relevant to my research?

A: The JUNE framework is an open-source tool for epidemiological simulations. It is a powerful tool that allows researchers to model and simulate the spread of diseases, making it a valuable resource for researchers in the field of epidemiology.

Q: What is the issue with accessing the required data for the JUNE framework?

A: The issue is that the get_june_data.sh script attempts to download data from a URL that is not publicly accessible, resulting in a 403 Forbidden error. This error message suggests that the URL is not publicly accessible, and alternative solutions are needed to access the data.

Q: What are the possible solutions to access the required data?

A: There are two possible solutions:

Alternative access to the data: Is there an alternative way to access the data that can be used instead of the get_june_data.sh script?
Direct sharing of the data: Would the JUNE team be willing to share the data directly with the researcher, considering their research purposes?

Q: What are the benefits of using the JUNE framework for my research?

A: The JUNE framework has several benefits, including:

Flexibility: The JUNE framework allows researchers to model and simulate the spread of diseases in a flexible and customizable way.
Accuracy: The JUNE framework uses individual-based models, which are more accurate than traditional compartmental models.
Scalability: The JUNE framework can be used to simulate the spread of diseases at various scales, from small communities to large populations.

Q: How can I get started with using the JUNE framework for my research?

A: To get started with using the JUNE framework, follow these steps:

Download the JUNE framework: Download the JUNE framework from the official website.
Read the documentation: Read the documentation to understand the framework and its components.
Contact the JUNE team: Contact the JUNE team to request access to the required data or to ask for guidance on how to proceed with running simulations.

Q: What are the next steps if I am unable to access the required data?

A: If you are unable to access the required data, the next steps are:

Contact the JUNE team: Contact the JUNE team to request alternative access to the data or to ask for guidance on how to proceed with running simulations.
Explore alternative datasets: Explore alternative datasets that can be used with the JUNE framework.
Modify the JUNE framework: Modify the JUNE framework to use alternative data sources or to simulate the spread of diseases in a different way.

Q: How can I contribute to the development of the JUNE framework?

A: You can contribute to the development of the JUNE framework by:

Reporting bugs: Report bugs or issues with the framework to the JUNE team.
Suggesting new features: Suggest new features or improvements to the framework.
Contributing code: Contribute code to the framework to improve its functionality or to add new features.

Conclusion

The JUNE framework is a powerful tool for epidemiological simulations, and it has the potential to greatly impact research in this field. However, accessing the required data can be a challenge. By understanding the possible solutions and the benefits of using the JUNE framework, researchers can overcome these challenges and make the most of this valuable resource.